AlliGator Windows

There are 3 main windows in AlliGator’s GUI and several accessory windows listed below. Most can be accessed directly from the Windows menu (see Windows Menu).

Main Windows

• AlliGator Window
  • AlliGator Panels
  • Analysis Status Indicator LEDs
    • Top row
    • Bottom row
  • Other buttons and indicators
• Notebook Window
  • Notebook Styles & Themes
    • Editing Themes
    • Saving & Loading Themes
  • Saving & Loading the Notebook
  • Tip
• Settings Window
  • Source Image
  • Data Information
  • Fluorescence Decay
    • Decay Pre-Processing
    • Advanced Analysis
      • IRF Extraction Options
      • IRF Optimization Options
      • Wavelet Analysis Options
      • Square Pulse Options
      • Average Lifetime Options
    • Fit Options
    • Fit Parameters
    • Styles
  • Fluorescence Decay Statistics
  • Intensity Time Trace
  • Phasor Plot
    • Phasor Plot Calculation
    • Phasor Plot Information Overlay
    • Phasor Plot Appearance
  • Phasor Graph
  • Single-Exponential Phasor Locus (SEPL)
    • Display
    • Phasor
    • IRF
    • Gates
  • Phasor Calibration
  • Lifetime Analysis
  • Plugins
  • Miscellaneous

Accessory Windows

• About AlliGator Window
• Context Help
• Dataset Information Window
• Source Image ROI Manager Window
• Phasor Plot ROI Manager Window
• Phasor Harmonic Manager Window
• Image Profile
  • Averaged Profile
  • Average Intensity Profile
  • Split Profile
  • Current ROI Definition
• Local Decay Graph Window
  • Decay Fit Information
• Histogram Window
• Plot Editor Window
  • Warning

Analysis Tools Windows

• Intensity Corrections Definition
• Fit Method Benchmark
  • Menu bar
  • Panels
  • Simulations panel
  • Decay, Fit & Residuals Plots Panel
  • Settings Panel
  • Scripts Panel
• Shot Noise Influence on Average Lifetime