Settings Window

The Settings window can be opened via the Windows:Show Settings menu item (Ctrl+E shortcut) in the main AlliGator window. It is comprised of multiple pages and sub-pages, which can be accessed via the top page selector:

_images/AlliGator-Settings-Pages.png

The different pages are described in the sections below. Note that any value change done in the Settings window immediately takes effect and is reflected in the corresponding AlliGator window control (if there is one).

Inversely, any change to a control in the AlliGator window is immediately reflected in the Settings window.

The value of the Settings controls are saved when AlliGator quits, and reloaded when it is restarted.

Source Image

_images/AlliGator-Settings-Source-Image.png

Data Information

_images/AlliGator-Settings-Data-Information.png

Fluorescence Decay

Decay Pre-Processing

_images/AlliGator-Settings-Decay-Preprocessing.png

Advanced Analysis

_images/AlliGator-Settings-Decay-Advanced-Analysis.png

Fit Options

_images/AlliGator-Settings-Decay-Fit-Options.png

Fit Parameters

_images/AlliGator-Settings-Decay-Fit-Parameters.png

Styles

_images/AlliGator-Settings-Decay-Styles.png

Fluorescence Decay Statistics

_images/AlliGator-Settings-Decay-Statistics.png

Time Traces

_images/AlliGator-Settings-Time-Traces.png

Phasor Plot

_images/AlliGator-Settings-Phasor-Plot.png

Phasor Graph

_images/AlliGator-Settings-Phasor-Gaph.png

Single-Exponential Phasor Locus (SEPL)

Display

_images/AlliGator-Settings-SEPL-Display.png

Phasor

_images/AlliGator-Settings-SEPL-Phasor.png

IRF

_images/AlliGator-Settings-SEPL-IRF.png

Gates

_images/AlliGator-Settings-SEPL-Gates.png

Phasor Calibration

_images/AlliGator-Settings-Phasor-Calibration.png

Lifetime Analysis

_images/AlliGator-Settings-Lifetime-Analysis.png

Miscellaneous

_images/AlliGator-Settings-Miscellaneous.png